STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06880COG1131 ABC-type multidrug transport system, ATPase component. (303 aa)    
Predicted Functional Partners:
RAM_06885
Hypothetical protein.
 
 
 0.957
RAM_06875
Hypothetical protein; COG0438 Glycosyltransferase.
 
     0.924
RAM_41300
Hypothetical protein.
 
 
 0.738
RAM_31325
ABC transporter permease; COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
 
 
 0.565
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
     0.517
RAM_24740
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.508
RAM_14570
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.459
RAM_40840
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.451
RAM_20080
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
 0.442
RAM_26330
Chaperone protein DnaK-like protein; COG0443 Molecular chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.