STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06885Hypothetical protein. (280 aa)    
Predicted Functional Partners:
RAM_06880
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.957
RAM_06875
Hypothetical protein; COG0438 Glycosyltransferase.
 
     0.948
RAM_41290
COG2834 Outer membrane lipoprotein-sorting protein.
 
     0.723
RAM_31315
ABC transporter ATP-binding protein; COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.680
RAM_41295
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.680
RAM_06890
Lipase class 2; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
  
     0.564
RAM_33350
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.516
RAM_33355
ABC transporter permease.
 
 
 0.498
RAM_33270
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.495
RAM_02840
Lipoprotein.
  
 
 0.482
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.