STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06895Hypothetical protein. (859 aa)    
Predicted Functional Partners:
RAM_06900
COG1404 Subtilisin-like serine proteases.
 
     0.886
RpoE-59
RNA polymerase sigma-70 factor, ECF subfamily protein; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.800
RpoE-4
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.782
RpoE-12
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.780
RAM_44410
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
     0.638
RAM_01545
Hypothetical protein.
 
     0.593
RAM_44420
Peptidase S8 and S53, subtilisin, kexin, sedolisin; COG1404 Subtilisin-like serine proteases.
 
     0.578
RAM_06890
Lipase class 2; COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold.
 
     0.551
nhaA
Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
  
    0.502
OtsB
Trehalose-phosphatase/glycoside hydrolase; COG1877 Trehalose-6-phosphatase.
   
    0.500
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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