STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06920Sugar hydrolase. (394 aa)    
Predicted Functional Partners:
RAM_06925
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.655
RAM_26170
Serine protease.
  
   
 0.559
RAM_43015
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
   
 0.547
RAM_06730
Peptidase.
  
   
 0.517
RAM_26750
Hypothetical protein; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
   
 0.514
RAM_25785
Glucosidase; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
   
 0.470
AbfA-10
alpha-N-arabinofuranosidase.
 
   0.465
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
   0.461
AbfA
alpha-N-arabinofuranosidase.
 
   
 0.459
AbfA-12
alpha-N-arabinofuranosidase.
 
   0.459
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.