STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06920Sugar hydrolase. (394 aa)    
Predicted Functional Partners:
RAM_06925
COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
       0.655
RAM_26170
Serine protease.
  
     0.558
RAM_43015
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
   
 0.553
RAM_06730
Peptidase.
  
     0.516
RAM_26750
Hypothetical protein; COG2273 Beta-glucanase/Beta-glucan synthetase.
   
 0.516
RAM_25785
Glucosidase; COG2273 Beta-glucanase/Beta-glucan synthetase.
 
   
 0.482
AbfA
alpha-N-arabinofuranosidase.
 
   
 0.464
RAM_06930
COG1846 Transcriptional regulators.
       0.457
RAM_00675
Endo-1,3-beta-glucanase; COG2273 Beta-glucanase/Beta-glucan synthetase.
   
 0.448
AbfA-10
alpha-N-arabinofuranosidase.
 
   0.444
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.