STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_06960COG2188 Transcriptional regulators. (256 aa)    
Predicted Functional Partners:
PdhR-6
COG2186 Transcriptional regulators.
  
  
 0.637
RAM_37375
COG2188 Transcriptional regulators.
  
     0.597
ManZ
Mannose/fructose-specific IIC/D component of PTS system; COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
 
  
 0.592
NagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.575
RAM_46125
COG2188 Transcriptional regulators.
  
     0.543
RAM_01360
COG2186 Transcriptional regulators.
  
  
 0.527
AgaS
COG2222 Predicted phosphosugar isomerases.
 
  
 0.509
PhnF
COG1725 Predicted transcriptional regulators.
  
     0.483
RAM_10965
COG2186 Transcriptional regulators.
  
  
 0.459
RAM_46525
COG2186 Transcriptional regulators.
  
  
 0.459
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.