Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RAM_07025 | RAM_07030 | Hypothetical protein. | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.572 |
RAM_07025 | RAM_07035 | Hypothetical protein. | COG4585 Signal transduction histidine kinase. | 0.572 |
RAM_07025 | RAM_07040 | Hypothetical protein. | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | 0.406 |
RAM_07025 | RAM_07045 | Hypothetical protein. | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.406 |
RAM_07030 | RAM_07025 | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | Hypothetical protein. | 0.572 |
RAM_07030 | RAM_07035 | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | COG4585 Signal transduction histidine kinase. | 0.958 |
RAM_07030 | RAM_07040 | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | 0.546 |
RAM_07030 | RAM_07045 | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.536 |
RAM_07035 | RAM_07025 | COG4585 Signal transduction histidine kinase. | Hypothetical protein. | 0.572 |
RAM_07035 | RAM_07030 | COG4585 Signal transduction histidine kinase. | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.958 |
RAM_07035 | RAM_07040 | COG4585 Signal transduction histidine kinase. | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | 0.556 |
RAM_07035 | RAM_07045 | COG4585 Signal transduction histidine kinase. | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.707 |
RAM_07040 | RAM_07025 | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | Hypothetical protein. | 0.406 |
RAM_07040 | RAM_07030 | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.546 |
RAM_07040 | RAM_07035 | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | COG4585 Signal transduction histidine kinase. | 0.556 |
RAM_07040 | RAM_07045 | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | 0.944 |
RAM_07045 | RAM_07025 | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | Hypothetical protein. | 0.406 |
RAM_07045 | RAM_07030 | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain. | 0.536 |
RAM_07045 | RAM_07035 | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | COG4585 Signal transduction histidine kinase. | 0.707 |
RAM_07045 | RAM_07040 | ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. | COG1136 ABC-type antimicrobial peptide transport system, ATPase component. | 0.944 |