STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XynAEndo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family. (221 aa)    
Predicted Functional Partners:
RAM_07055
COG0726 Predicted xylanase/chitin deacetylase.
     0.977
Pel-2
Pectate lyase.
 
   
 0.772
AbfA-12
alpha-N-arabinofuranosidase.
 
     0.764
AbfA-10
alpha-N-arabinofuranosidase.
 
     0.757
XynA-3
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
   
 0.755
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
 
   
 0.754
AbfA-2
alpha-N-arabinofuranosidase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
     0.750
RAM_19080
Glycoside hydrolase; COG4124 Beta-mannanase; Belongs to the glycosyl hydrolase 26 family.
   
 0.736
RAM_20365
COG3693 Beta-1,4-xylanase.
   
 0.728
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
  
   
 0.722
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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