STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07065Hypothetical protein. (445 aa)    
Predicted Functional Partners:
RAM_07060
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.962
RAM_07070
YVTN beta-propeller repeat-containing protein.
 
    0.951
RAM_17980
Hypothetical protein.
  
     0.545
RAM_04070
Hypothetical protein.
 
     0.525
RAM_33040
Hypothetical protein.
  
     0.522
RAM_17990
COG1289 Predicted membrane protein.
  
     0.516
RAM_33275
Integral membrane protein.
 
 
 0.507
RAM_33355
ABC transporter permease.
 
 
 0.484
GlbN-2
Oxygen-binding heme protein; COG2346 Truncated hemoglobins.
 
     0.466
RAM_33270
COG1131 ABC-type multidrug transport system, ATPase component.
 
 
 0.445
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.