STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07075COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins. (192 aa)    
Predicted Functional Partners:
RAM_23780
Signal peptide protein.
  
     0.671
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
    0.647
RAM_07780
COG3669 Alpha-L-fucosidase.
  
    0.623
RAM_07080
Hypothetical protein.
       0.620
RAM_30740
Hypothetical protein.
  
     0.610
RAM_30735
Hypothetical protein.
  
     0.586
RAM_05370
Hypothetical protein.
  
     0.578
RAM_47910
Hypothetical protein.
  
     0.574
RAM_08610
Subtilisin family peptidase; COG1404 Subtilisin-like serine proteases; Belongs to the peptidase S8 family.
  
    0.560
RAM_44960
COG1309 Transcriptional regulator.
  
     0.500
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.