STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07110COG3387 Glucoamylase and related glycosyl hydrolases. (600 aa)    
Predicted Functional Partners:
Gdh
COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
     0.807
OtsA
COG0380 Trehalose-6-phosphate synthase.
 
   
 0.738
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
 
   
 0.709
TreY
COG3280 Maltooligosyl trehalose synthase.
 
   
 0.532
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
 
  
 0.525
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
     
 0.524
RAM_23790
COG0668 Small-conductance mechanosensitive channel.
 
    0.505
glgE
Alpha amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
 
   
 0.468
RAM_28445
COG1926 Predicted phosphoribosyltransferases.
  
     0.451
RAM_21670
COG1926 Predicted phosphoribosyltransferases.
  
     0.418
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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