STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07260Hypothetical protein. (119 aa)    
Predicted Functional Partners:
RAM_07250
COG0642 Signal transduction histidine kinase.
 
 0.961
RAM_07255
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
 
   
 0.952
RAM_07270
COG2124 Cytochrome P450.
 
   0.909
RAM_07265
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
    0.824
RAM_39460
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
 
 0.813
RAM_32815
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
 
 0.758
RAM_30380
COG1396 Predicted transcriptional regulators.
  
     0.682
RAM_38385
COG0642 Signal transduction histidine kinase.
 
 0.682
RAM_13365
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.681
FadB-3
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
 0.681
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.