STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07270COG2124 Cytochrome P450. (402 aa)    
Predicted Functional Partners:
RAM_07260
Hypothetical protein.
 
   0.909
RAM_07250
COG0642 Signal transduction histidine kinase.
 
 
   0.886
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.879
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.879
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 0.879
RAM_07255
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
 
     0.828
RAM_07265
ATP/GTP-binding protein; COG2229 Predicted GTPase.
 
 
   0.821
RAM_28155
COG2124 Cytochrome P450.
  
     0.748
RAM_18750
Hypothetical protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.649
RAM_33005
COG2124 Cytochrome P450.
  
     0.602
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.