STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07315Integrase catalytic subunit; COG2801 Transposase and inactivated derivatives. (305 aa)    
Predicted Functional Partners:
RAM_07310
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.876
RAM_39735
COG2963 Transposase and inactivated derivatives.
 
  
 0.787
RAM_45745
COG2963 Transposase and inactivated derivatives.
 
  
 0.787
RAM_07320
Hypothetical protein.
       0.596
RAM_25715
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.498
RAM_07305
COG1309 Transcriptional regulator.
  
    0.492
RAM_07370
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.475
RAM_28130
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.475
RAM_29810
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.475
RAM_37655
Transposase IS3/IS911 family protein; COG2963 Transposase and inactivated derivatives.
 
  
 0.475
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.