STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07395COG1846 Transcriptional regulators. (178 aa)    
Predicted Functional Partners:
RAM_07400
DoxX family protein.
 
     0.600
RAM_43700
Molybdopterin-binding protein; COG2452 Predicted site-specific integrase-resolvase.
  
     0.511
RAM_14570
COG1132 ABC-type multidrug transport system, ATPase and permease components.
 
     0.460
RAM_07415
Extradiol ring-cleavage dioxygenase class III protein subunit B.
 
   
 0.449
mshD
Acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
  
     0.440
RAM_07405
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.438
RAM_26215
COG2409 Predicted drug exporters of the RND superfamily.
 
  
 0.426
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.