STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07445DNA breaking-rejoining enzyme; COG0582 Integrase; Belongs to the 'phage' integrase family. (372 aa)    
Predicted Functional Partners:
RAM_33020
Hypothetical protein.
  
     0.562
RAM_07450
Hypothetical protein.
       0.517
RAM_29885
Recombinase; COG1961 Site-specific recombinases, DNA invertase Pin homologs.
 
  
 0.512
RAM_44205
Hypothetical protein; COG0456 Acetyltransferases.
  
     0.492
RAM_28610
Hypothetical protein; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
  
     0.477
RAM_38775
Transposase IS4 family protein; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.458
RAM_38850
Transposase IS4 family protein; COG3385 FOG: Transposase and inactivated derivatives.
  
     0.458
RAM_26315
Hypothetical protein.
  
     0.427
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.