STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07495Von Willebrand factor type A; COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain. (535 aa)    
Predicted Functional Partners:
RAM_07485
Hypothetical protein.
 
     0.962
RAM_07500
Hypothetical protein.
 
     0.960
RAM_07490
Toxic anion resistance family protein; COG3853 Uncharacterized protein involved in tellurite resistance.
 
     0.903
RAM_41310
COG1178 ABC-type Fe3+ transport system, permease component.
  
  
 0.786
RAM_42180
Integral membrane protein.
 
     0.702
TrxB
Thioredoxin reductase; COG0784 FOG: CheY-like receiver.
  
  
 0.657
RAM_14780
Hypothetical protein; COG3839 ABC-type sugar transport systems, ATPase components.
  
     0.650
RAM_07475
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
  
  
 0.622
RAM_44600
HD superfamily hydrolase.
 
     0.594
ChlD
COG1239 Mg-chelatase subunit ChlI.
  
 
 0.568
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.