STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07525COG3547 Transposase and inactivated derivatives. (350 aa)    
Predicted Functional Partners:
RAM_07530
Pentapeptide repeat-containing protein; COG1357 Uncharacterized low-complexity proteins.
       0.740
RAM_07540
Oxidoreductase FAD-binding region; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
 
     0.695
RAM_07535
Molybdopterin binding domain-containing oxidoreductase; COG2041 Sulfite oxidase and related enzymes.
       0.644
RAM_31320
COG3547 Transposase and inactivated derivatives.
  
     0.526
RAM_07545
Hypothetical protein.
       0.454
Ocd-2
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
       0.432
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.