STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07545Hypothetical protein. (878 aa)    
Predicted Functional Partners:
RAM_07770
Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.641
RAM_22345
COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
     0.635
RAM_41110
Hypothetical protein.
  
     0.629
RAM_01435
COG3584 Uncharacterized protein conserved in bacteria.
  
     0.619
RAM_26630
alpha-L-fucosidase; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
     0.606
RAM_16740
COG3669 Alpha-L-fucosidase.
  
     0.592
RAM_15730
COG3669 Alpha-L-fucosidase.
  
     0.576
RAM_22520
Hypothetical protein.
  
     0.576
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
  
     0.539
RAM_07535
Molybdopterin binding domain-containing oxidoreductase; COG2041 Sulfite oxidase and related enzymes.
       0.535
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.