STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07550LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. (791 aa)    
Predicted Functional Partners:
RAM_07555
COG0443 Molecular chaperone.
 
     0.937
RAM_07560
Hypothetical protein.
 
     0.853
RAM_07570
GTPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family.
 
     0.840
RAM_07565
Isoniazid inducible gene protein IniA; COG0699 Predicted GTPases (dynamin-related).
 
     0.837
RAM_26345
Dynamin; COG0699 Predicted GTPases (dynamin-related).
  
     0.766
RAM_26340
GTPase; COG0699 Predicted GTPases (dynamin-related).
 
     0.745
RAM_28300
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.635
RAM_13480
Hypothetical protein.
  
     0.623
RAM_45135
Hypothetical protein.
  
     0.591
RAM_09155
Hypothetical protein.
  
     0.569
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.