STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07570GTPase; COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family. (400 aa)    
Predicted Functional Partners:
RAM_07565
Isoniazid inducible gene protein IniA; COG0699 Predicted GTPases (dynamin-related).
 
     0.951
RAM_07560
Hypothetical protein.
 
  
 0.904
RAM_07550
LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins.
 
     0.841
RAM_07555
COG0443 Molecular chaperone.
 
  
 0.840
RAM_26345
Dynamin; COG0699 Predicted GTPases (dynamin-related).
 
   
 0.807
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.714
gpsA
COG0240 Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.713
cmk
COG0283 Cytidylate kinase.
  
  
 0.614
TypA
GTP-binding protein TypA; COG1217 Predicted membrane GTPase involved in stress response.
  
  
 0.600
RAM_30800
Ribosomal large subunit pseudouridine synthase B; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.584
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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