STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07580COG1733 Predicted transcriptional regulators. (120 aa)    
Predicted Functional Partners:
RAM_24125
COG1733 Predicted transcriptional regulators.
  
     0.774
RAM_30610
COG1733 Predicted transcriptional regulators.
  
     0.703
RAM_07575
Endoribonuclease; COG0251 Putative translation initiation inhibitor, yjgF family.
       0.558
RAM_35280
COG1733 Predicted transcriptional regulators.
  
     0.531
RAM_07585
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.498
RAM_07590
COG1309 Transcriptional regulator.
       0.498
RAM_35350
COG1733 Predicted transcriptional regulators.
  
     0.495
RAM_23490
COG1733 Predicted transcriptional regulators.
  
     0.431
RAM_29270
COG1733 Predicted transcriptional regulators.
  
     0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.