STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07600Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (136 aa)    
Predicted Functional Partners:
RAM_43510
COG5398 Heme oxygenase.
  
  
  0.914
RAM_07605
Licheninase; COG3405 Endoglucanase Y.
       0.535
RAM_01455
COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase).
  
    0.512
RAM_26200
Hypothetical protein.
  
     0.500
RAM_07595
Lytic transglycosylase.
       0.489
RAM_33260
ATPase.
  
    0.483
RAM_00765
Pyridoxamine 5'-phosphate oxidase.
  
     0.478
CobK
COG2099 Precorrin-6x reductase.
 
     0.468
RAM_26540
COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.448
RAM_18575
Hypothetical protein.
  
   
 0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.