STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07605Licheninase; COG3405 Endoglucanase Y. (401 aa)    
Predicted Functional Partners:
PhoA
Alkaline phosphatase; COG3291 FOG: PKD repeat.
 
     0.688
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
   
 0.587
RAM_07600
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
       0.534
RAM_25455
Hypothetical protein.
  
     0.497
RAM_25460
ATP/GTP-binding protein; COG0714 MoxR-like ATPases.
  
     0.450
RAM_06740
Carbohydrate-binding protein.
   
 0.443
RAM_21235
Hypothetical protein.
  
     0.422
RAM_35925
Hypothetical protein.
  
     0.421
RAM_00820
Interphotoreceptor retinoid-binding protein; COG0793 Periplasmic protease.
  
   
 0.418
RAM_07485
Hypothetical protein.
  
     0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.