STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07630Aminotransferase class V; COG0520 Selenocysteine lyase. (572 aa)    
Predicted Functional Partners:
RAM_07615
ABC transporter substrate-binding protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain; Belongs to the bacterial solute-binding protein 3 family.
 
   
 0.825
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
  
 
 0.824
RAM_07625
COG1126 ABC-type polar amino acid transport system, ATPase component.
     
 0.791
RAM_07620
COG0765 ABC-type amino acid transport system, permease component.
       0.787
RAM_03795
Beta-lactamase-like protein; COG2367 Beta-lactamase class A.
  
     0.654
RAM_07635
Hypothetical protein.
       0.605
RAM_42180
Integral membrane protein.
 
     0.598
SufB
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
 
 0.597
SufD
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
 
 0.597
SufC
COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
  
 0.596
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.