STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07645Peptidase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (518 aa)    
Predicted Functional Partners:
RAM_06730
Peptidase.
  
     0.490
RAM_18845
Transposase.
  
     0.475
RAM_07650
COG1131 ABC-type multidrug transport system, ATPase component.
       0.474
RAM_07655
COG0842 ABC-type multidrug transport system, permease component.
       0.474
RAM_07660
Hypothetical protein.
 
     0.438
RAM_41010
Hypothetical protein.
  
     0.427
RAM_05610
alpha-L-rhamnosidase.
  
    0.413
RAM_07640
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
  
    0.410
RAM_18035
COG5516 Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding.
  
     0.408
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.403
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.