STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07675Hypothetical protein; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins. (359 aa)    
Predicted Functional Partners:
RAM_18900
Glycoside hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
     0.738
RAM_29540
Coagulation factor 5/8 type domain protein.
 
     0.736
RAM_38145
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
    0.734
RAM_07740
Unsaturated glucuronyl hydrolase.
  
     0.733
RAM_38100
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
    0.731
RAM_21480
exo-poly-alpha-D-galacturonosidase precursor; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.725
RAM_07775
COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
     0.720
RAM_40200
Glycoside hydrolase; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
     0.718
RAM_18705
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
    0.711
LacZ
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.697
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.