STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AraHL-arabinose ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (341 aa)    
Predicted Functional Partners:
AraG
COG1129 ABC-type sugar transport system, ATPase component.
 0.994
AraF
L-arabinose ABC transporter periplasmic protein; COG1879 ABC-type sugar transport system, periplasmic component.
 
 0.964
rbsA
Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.873
RbsA
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.872
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.871
XylG
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.868
RAM_09330
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.862
RbsB
COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.859
RAM_15715
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.859
RbsB-2
COG1879 ABC-type sugar transport system, periplasmic component.
 
 
 0.851
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.