STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07725Hypothetical protein. (435 aa)    
Predicted Functional Partners:
RAM_07720
Hypothetical protein.
 
     0.949
RAM_34190
Cyclase-dehydratase; COG0065 3-isopropylmalate dehydratase large subunit.
  
     0.764
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
   
 
 0.734
RAM_30735
Hypothetical protein.
  
   
 0.628
RAM_30740
Hypothetical protein.
  
   
 0.627
RAM_45815
Hypothetical protein.
 
 
   0.616
XerC
Phage integrase family protein; COG4974 Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
   
 0.564
RAM_46090
Hypothetical protein.
  
     0.561
RAM_41805
Hypothetical protein; COG2367 Beta-lactamase class A.
  
    0.523
RAM_05975
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
 
     0.522
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.