STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07770Glycoside hydrolase; Belongs to the glycosyl hydrolase 28 family. (493 aa)    
Predicted Functional Partners:
RAM_07775
COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
   
 0.772
RAM_28080
Hypothetical protein.
 
   
 0.688
RAM_07675
Hypothetical protein; COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
   
 0.678
RAM_18705
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.672
RAM_38145
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.665
RAM_38100
Rhamnogalacturan acetylesterase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 0.662
RAM_22935
Activating enzyme of the ubiquitin-like protein; COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
     0.656
RAM_22055
Hypothetical protein.
  
     0.648
RAM_07545
Hypothetical protein.
 
   
 0.647
RAM_07780
COG3669 Alpha-L-fucosidase.
 
     0.644
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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