STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07780COG3669 Alpha-L-fucosidase. (590 aa)    
Predicted Functional Partners:
RAM_16740
COG3669 Alpha-L-fucosidase.
  
  
  0.956
RAM_15730
COG3669 Alpha-L-fucosidase.
  
  
  0.947
RAM_26630
alpha-L-fucosidase; COG4962 Flp pilus assembly protein, ATPase CpaF.
  
  
  0.926
RAM_20310
Large protein.
 
  
  0.913
RAM_17025
Hypothetical protein.
 
     0.786
RAM_30735
Hypothetical protein.
 
     0.754
RAM_07775
COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
 
     0.749
RAM_17945
Hypothetical protein.
  
     0.737
RAM_37925
COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.720
RAM_28675
Carbohydrate-binding protein; COG3250 Beta-galactosidase/beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
   
 0.710
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.