STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07900Hypothetical protein; COG0533 Metal-dependent proteases with possible chaperone activity. (356 aa)    
Predicted Functional Partners:
RAM_07905
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
       0.555
RAM_07885
Cholesterol oxidase; COG2303 Choline dehydrogenase and related flavoproteins.
       0.537
RAM_07890
Flavoprotein; COG2072 Predicted flavoprotein involved in K+ transport.
       0.537
RAM_07895
Putative monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
       0.537
RAM_06690
COG1309 Transcriptional regulator.
  
     0.453
RAM_25085
COG1846 Transcriptional regulators.
  
     0.435
RAM_38165
COG1309 Transcriptional regulator.
  
     0.427
RAM_10910
COG1846 Transcriptional regulators.
  
     0.402
RAM_30020
Transmembrane transport protein.
  
    0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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