STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07905AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (351 aa)    
Predicted Functional Partners:
RAM_07895
Putative monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.585
RAM_19105
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.579
RAM_07890
Flavoprotein; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.569
RAM_07900
Hypothetical protein; COG0533 Metal-dependent proteases with possible chaperone activity.
       0.553
RAM_46755
COG3687 Predicted metal-dependent hydrolase.
  
     0.543
RAM_34550
COG1309 Transcriptional regulator.
  
  
 0.505
RAM_19720
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
 
 0.496
RAM_35785
Hypothetical protein; COG0406 Fructose-2,6-bisphosphatase.
 
     0.479
RAM_42480
COG1309 Transcriptional regulator.
  
  
 0.478
RAM_37810
AraC family transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.474
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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