STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_07920Thioredoxin-related protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (81 aa)    
Predicted Functional Partners:
ResB
COG1333 ResB protein required for cytochrome c biosynthesis.
 
  
 0.540
RAM_33545
COG1290 Cytochrome b subunit of the bc complex.
 
     0.488
CcdA
COG0785 Cytochrome c biogenesis protein.
 
  
 0.484
RAM_07915
Hypothetical protein.
       0.474
RAM_29215
Hypothetical protein; COG1290 Cytochrome b subunit of the bc complex.
 
     0.458
RAM_03935
Hypothetical protein.
  
     0.436
RAM_25195
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.425
RAM_45175
Type II secretion system protein; COG4965 Flp pilus assembly protein TadB.
  
     0.406
RAM_02560
Cytochrome C assembly membrane protein; COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
  
  
 0.405
RAM_08490
ACT domain-containing protein.
 
     0.404
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.