STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08075Hypothetical protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain). (231 aa)    
Predicted Functional Partners:
RAM_40595
Hypothetical protein.
 
     0.757
RAM_17480
Hypothetical protein.
  
     0.712
RAM_35535
Hypothetical protein; COG0381 UDP-N-acetylglucosamine 2-epimerase.
  
     0.700
RAM_41615
Hypothetical protein.
  
    0.694
RAM_31160
Hypothetical protein.
  
    0.662
RAM_14785
Hypothetical protein.
  
     0.644
RAM_08065
COG3279 Response regulator of the LytR/AlgR family.
       0.623
RAM_08070
Two-component system histidine kinase; COG3275 Putative regulator of cell autolysis.
       0.623
RAM_31505
Hypothetical protein.
  
     0.615
RAM_39185
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.614
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.