STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LacICOG1609 Transcriptional regulators. (327 aa)    
Predicted Functional Partners:
FrcA
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.828
RbsC-3
COG4158 Predicted ABC-type sugar transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
    0.805
ManA
COG1482 Phosphomannose isomerase.
     
 0.793
RAM_22455
COG1609 Transcriptional regulators.
  
     0.772
RAM_44640
COG1609 Transcriptional regulators.
  
     0.759
RbsB-2
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.736
RAM_28930
COG1609 Transcriptional regulators.
  
     0.586
LacI-6
COG1349 Transcriptional regulators of sugar metabolism.
  
   
 0.515
GltB
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
    
 
 0.453
GltB-2
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
    
 
 0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.