STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08190COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA. (270 aa)    
Predicted Functional Partners:
RAM_08200
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
       0.666
RAM_08205
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.666
RAM_08185
Hypothetical protein.
       0.549
PaaG-3
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.547
RAM_13430
Hypothetical protein.
  
    0.541
GltB
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
       0.520
GltB-2
Glutamate synthase (NADPH/NADH) large chain; COG0067 Glutamate synthase domain 1.
       0.520
RAM_13445
Hypothetical protein.
  
     0.518
RAM_25375
COG0789 Predicted transcriptional regulators.
  
     0.492
RAM_13115
Type III restriction enzyme, res subunit; COG1061 DNA or RNA helicases of superfamily II.
 
    0.491
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.