STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PaaG-3COG1024 Enoyl-CoA hydratase/carnithine racemase. (259 aa)    
Predicted Functional Partners:
PaaH-6
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.956
PaaH
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.954
PaaH-2
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.951
PaaH-3
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.951
PaaH-4
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.909
PaaH-5
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.874
RAM_08200
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
       0.791
RAM_08205
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
       0.789
RAM_12990
Lipid-transfer protein; COG0183 Acetyl-CoA acetyltransferase.
  
 0.577
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.568
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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