STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08205Hypothetical protein; COG0500 SAM-dependent methyltransferases. (386 aa)    
Predicted Functional Partners:
CobI
COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.951
RAM_08200
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
       0.878
PaaG-3
COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.789
CobM
COG2875 Precorrin-4 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.678
CobH
precorrin-8X methylmutase; COG2082 Precorrin isomerase.
  
  
 0.674
RAM_08190
COG1119 ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA.
       0.666
RAM_45975
Hypothetical protein.
  
     0.610
RAM_08210
COG2343 Uncharacterized protein conserved in bacteria.
       0.555
CysG
uroporphyrin-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
  
 0.516
CobF
Precorrin 6A synthase; COG2243 Precorrin-2 methylase.
  
  
 0.507
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.