STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08255COG2360 Leu/Phe-tRNA-protein transferase. (256 aa)    
Predicted Functional Partners:
RAM_08250
COG1846 Transcriptional regulators.
 
     0.678
RAM_22060
Fused NTPase and glycosyl transferase; COG1396 Predicted transcriptional regulators.
 
 
 
 0.517
RAM_08240
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
       0.514
RAM_08245
COG1695 Predicted transcriptional regulators.
       0.514
RAM_13290
Hypothetical protein.
  
     0.470
RAM_33330
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
  
     0.455
RAM_10230
COG1476 Predicted transcriptional regulators.
   
 
 0.443
RAM_34640
COG1396 Predicted transcriptional regulators.
   
 
 0.443
RAM_36260
COG1476 Predicted transcriptional regulators.
   
 
 0.443
RAM_43230
COG1476 Predicted transcriptional regulators.
   
 
 0.443
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.