STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08265Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases). (299 aa)    
Predicted Functional Partners:
PdxH
COG0259 Pyridoxamine-phosphate oxidase.
     
  0.900
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
     
  0.900
RAM_42830
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.716
RAM_08260
Hypothetical protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
  
    0.713
RAM_11130
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.594
RAM_25335
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
 0.555
RAM_33135
COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
 
 
0.496
RAM_34775
Oxidoreductase; COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.452
RAM_29470
COG0656 Aldo/keto reductases, related to diketogulonate reductase.
 
 
0.443
RAM_01445
Oxidoreductase; COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases).
  
     0.412
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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