STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08285COG0110 Acetyltransferase (isoleucine patch superfamily). (251 aa)    
Predicted Functional Partners:
RAM_08385
Methyltransferase; COG0500 SAM-dependent methyltransferases.
 
   
 0.861
RAM_34330
Hypothetical protein.
 
   
 0.840
RAM_08200
Methyltransferase type 11; COG0500 SAM-dependent methyltransferases.
 
     0.834
RAM_08380
Hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
  
   
 0.781
RAM_12440
Hypothetical protein.
  
     0.769
RAM_08365
COG0438 Glycosyltransferase.
 
  
 0.723
RihA
Purine nucleosidase; COG1957 Inosine-uridine nucleoside N-ribohydrolase.
 
  
 0.662
RAM_13255
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.658
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.648
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.648
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.