STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08330PA domain-containing protein. (516 aa)    
Predicted Functional Partners:
RAM_33020
Hypothetical protein.
 
    0.666
RAM_34430
Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
 
    0.632
RAM_22335
Hypothetical protein.
 
    0.574
RAM_39810
Hypothetical protein.
  
 0.547
RAM_08335
Hypothetical protein.
       0.544
RAM_26285
Hypothetical protein.
 
  
 0.530
RAM_32620
Hypothetical protein.
 
     0.530
RAM_14155
Hypothetical protein.
  
   
 0.514
RAM_06375
Hypothetical protein.
  
     0.490
RAM_01200
Hypothetical protein.
 
 
 0.489
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.