STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08390Hypothetical protein. (141 aa)    
Predicted Functional Partners:
RAM_05975
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
  
     0.589
RAM_08380
Hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
       0.570
RAM_08385
Methyltransferase; COG0500 SAM-dependent methyltransferases.
       0.570
RAM_08375
COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family.
       0.563
RAM_47865
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
  
     0.557
RAM_11835
Transmembrane protein.
  
     0.553
RAM_33945
Hypothetical protein.
  
     0.522
RAM_24130
Hypothetical protein.
  
     0.514
RAM_47895
Probable ADP-ribosylglycohydrolase.
  
     0.479
RAM_44130
Hypothetical protein.
  
     0.475
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.