Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ComE | FixA | RAM_34315 | RAM_08400 | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | COG2086 Electron transfer flavoprotein, beta subunit. | 0.513 |
| ComE | FixB | RAM_34315 | RAM_08405 | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | COG2025 Electron transfer flavoprotein, alpha subunit. | 0.513 |
| ComE | RAM_08395 | RAM_34315 | RAM_08395 | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | 0.400 |
| FixA | ComE | RAM_08400 | RAM_34315 | COG2086 Electron transfer flavoprotein, beta subunit. | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | 0.513 |
| FixA | FixB | RAM_08400 | RAM_08405 | COG2086 Electron transfer flavoprotein, beta subunit. | COG2025 Electron transfer flavoprotein, alpha subunit. | 0.999 |
| FixA | RAM_08395 | RAM_08400 | RAM_08395 | COG2086 Electron transfer flavoprotein, beta subunit. | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | 0.557 |
| FixB | ComE | RAM_08405 | RAM_34315 | COG2025 Electron transfer flavoprotein, alpha subunit. | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | 0.513 |
| FixB | FixA | RAM_08405 | RAM_08400 | COG2025 Electron transfer flavoprotein, alpha subunit. | COG2086 Electron transfer flavoprotein, beta subunit. | 0.999 |
| FixB | RAM_08395 | RAM_08405 | RAM_08395 | COG2025 Electron transfer flavoprotein, alpha subunit. | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | 0.445 |
| Gpm-4 | RAM_08395 | RAM_34335 | RAM_08395 | Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family. | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | 0.438 |
| Gpm-4 | RAM_34330 | RAM_34335 | RAM_34330 | Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family. | Hypothetical protein. | 0.936 |
| RAM_02385 | RAM_08395 | RAM_02385 | RAM_08395 | Aromatic compounds degradation protein paaI. | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | 0.400 |
| RAM_02385 | RAM_34330 | RAM_02385 | RAM_34330 | Aromatic compounds degradation protein paaI. | Hypothetical protein. | 0.644 |
| RAM_08395 | ComE | RAM_08395 | RAM_34315 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | Competence protein ComEC; COG0658 Predicted membrane metal-binding protein. | 0.400 |
| RAM_08395 | FixA | RAM_08395 | RAM_08400 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | COG2086 Electron transfer flavoprotein, beta subunit. | 0.557 |
| RAM_08395 | FixB | RAM_08395 | RAM_08405 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | COG2025 Electron transfer flavoprotein, alpha subunit. | 0.445 |
| RAM_08395 | Gpm-4 | RAM_08395 | RAM_34335 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | Phosphoglycerate mutase; COG0406 Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family. | 0.438 |
| RAM_08395 | RAM_02385 | RAM_08395 | RAM_02385 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | Aromatic compounds degradation protein paaI. | 0.400 |
| RAM_08395 | RAM_08895 | RAM_08395 | RAM_08895 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | COG1461 Predicted kinase related to dihydroxyacetone kinase. | 0.944 |
| RAM_08395 | RAM_34330 | RAM_08395 | RAM_34330 | DegV family protein; COG1307 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.413 |
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