STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmpCBeta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases. (347 aa)    
Predicted Functional Partners:
RAM_08995
Hypothetical protein.
  
 
   0.644
RAM_39105
Integral membrane protein.
  
 
   0.621
RAM_12385
Hypothetical protein.
  
 
   0.611
RAM_03125
Hypothetical protein.
  
 
   0.588
RAM_09000
Hypothetical protein; COG0439 Biotin carboxylase.
  
 
   0.581
RAM_08465
Scramblase family protein; COG1190 Lysyl-tRNA synthetase (class II).
       0.527
RAM_39110
Hypothetical protein.
  
 
   0.506
RAM_08450
COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.501
RAM_08455
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.499
RAM_45375
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
      
 0.497
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.