STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08520Hypothetical protein. (306 aa)    
Predicted Functional Partners:
RAM_08525
Hypothetical protein.
 
     0.944
RAM_08515
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
     0.925
RAM_08530
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
     0.899
RAM_22550
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
     0.805
RAM_22575
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
     0.798
RAM_22555
COG1653 ABC-type sugar transport system, periplasmic component.
 
   
 0.675
RAM_07125
COG3397 Uncharacterized protein conserved in bacteria.
  
     0.578
RAM_35600
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
    0.566
CpbD
COG3397 Uncharacterized protein conserved in bacteria.
  
     0.558
RAM_07660
Hypothetical protein.
  
     0.541
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.