STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08580COG3631 Ketosteroid isomerase-related protein. (293 aa)    
Predicted Functional Partners:
RAM_35415
Transposase.
  
     0.652
RAM_47880
NAD:arginine ADP-ribosyltransferase with a RelA/SpoT domain; COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.608
RAM_47015
Lipoprotein.
  
     0.606
RAM_44130
Hypothetical protein.
  
     0.603
RAM_25295
Hypothetical protein.
  
     0.581
RAM_08585
Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat.
       0.574
RAM_05275
COG3227 Zinc metalloprotease (elastase).
  
  
 0.552
RAM_47895
Probable ADP-ribosylglycohydrolase.
 
     0.551
RAM_11445
Hypothetical protein.
  
     0.549
RAM_05285
Zinc metalloprotease; Extracellular zinc metalloprotease.
  
  
 0.542
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.