STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08585Ankyrin repeat-containing protein; COG0666 FOG: Ankyrin repeat. (438 aa)    
Predicted Functional Partners:
RAM_39810
Hypothetical protein.
  
 
 0.627
RAM_22055
Hypothetical protein.
 
 0.581
RAM_08580
COG3631 Ketosteroid isomerase-related protein.
       0.574
RifB
COG3321 Polyketide synthase modules and related proteins.
  
 0.543
RAM_31455
COG5126 Ca2+-binding protein (EF-Hand superfamily).
   
 0.537
AcuC
Acetoin utilization protein AcuC; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
   
 0.536
RAM_28795
Hypothetical protein.
  
     0.524
RAM_16700
COG2940 Proteins containing SET domain.
    
 0.519
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
  
 0.513
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
 0.505
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.