STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08595Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (298 aa)    
Predicted Functional Partners:
RAM_08590
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
    
0.826
RAM_08600
COG1309 Transcriptional regulator.
       0.559
RAM_32245
Oxidoreductase; COG0778 Nitroreductase.
 
    0.521
RAM_01440
Oxidoreductase; COG0778 Nitroreductase.
 
    0.507
RAM_34970
DsbA oxidoreductase.
   
    0.480
RAM_44550
COG0259 Pyridoxamine-phosphate oxidase.
  
     0.472
RAM_42465
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
  
 
 0.451
RAM_46460
NADPH-dependent FMN reductase; COG0431 Predicted flavoprotein.
  
 
 0.451
RAM_05615
Hypothetical protein; COG2887 RecB family exonuclease.
 
     0.443
RAM_30420
Hypothetical protein.
 
    0.429
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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