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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_08685COG1309 Transcriptional regulator. (199 aa)    
Predicted Functional Partners:
RAM_08680
Hypothetical protein.
 
     0.930
RAM_08675
Hypothetical protein.
 
     0.919
RAM_45935
COG4308 Limonene-1,2-epoxide hydrolase.
  
     0.622
RAM_06965
SARP family transcriptional regulator fused with ATPase domain; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
 
 0.607
RAM_35415
Transposase.
  
     0.569
RAM_17945
Hypothetical protein.
  
     0.531
RAM_45065
Hypothetical protein.
  
     0.517
RAM_00060
Hypothetical protein.
  
     0.515
RAM_01800
Hypothetical protein.
  
     0.515
RAM_31525
Hypothetical protein.
  
     0.509
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.